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Flash
Fast Length Adjustment of Short reads is a very fast and accurate software tool to merge paired-end reads from next-generation sequencing experiments. Website for Flash.
PeakSplitter
Software for Subdivision of ChIP-seq/ChIP-chip regions into discrete signal peaks. Website for PeakSplitter*.
Installation in cluster directory:
/cluster/tufts/ngsp/ngsp/PeakSplitter_Cpp/PeakSplitter_Linux64