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User application specific documentation is found on the following sites. Tufts cluster Application FAQ section details how to start the application.

SimBiology and BioInformatic Matlab Toolboxes.
These are licensed under Tufts Network concurrent license. Both toolboxes are included in the matlab user session. For additional examples and demos see:

Working with Illumina data

Working with 454 data

All Bioinformatics demos can be accessed on this demo page

MATLAB Central File Exchange for user contributed matlab scripts.

blast
BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit. The BLAST+ applications have a number of performance and feature improvements over the legacy BLAST applications.

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