Page Comparison

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Classification	Module
Align/Mapping	blast/2.2.24 blat/20140708 bowtie/0.12.7* bowtie/1.0.1 bowtie/2.1.0 bowtie2/2.2.3* bwa/0.7.9a exonerate/2.2.0
Assembly	AbySS/1.5.2 pandaseq/2.5 trinity/7.17.14 velvet/1.0.19 velvet/1.2.03 velvet/1.2.10
BioVisual	cytoscapeCytoscape/2.8.3 IGV/1.5.30
ChIP-Seq	MACS/1.4.2-1 MAnorm/2014-04-03
General Purpose	R/2. 10.1 R/2. 15. 0* R/2.15.2 R/2.15. 3 R/3.01 R/3.0.2 R/3.0.3 R/3.1.0 mathematica/8.0 mathematica/8.0. 04 4 mathematica/9.0.0 mathematica/9.0.1 matlab/2011b matlab/2012a mathematica/10.0.2 matlab/2012b matlab/2013a* matlab/2014a matlab/2014b
Microbial ecology	QIIME/1.5.0* QIIME/1.6.0 QIIME/1.7.0 QIIME/1.8.0 QIIME/1.9.0 mothur/1.25.1 mothur/1.29.1

Classification	Module
NGS	CirSeq/3 GATK/3.1-1 HTseq/0.5.4a* HTseq/0.6.1p1 IGV/1.5.30 bedtools/2.17.0* bedtools/2.19.1 bowtie/0.12.7* bowtie/1.0.1 bowtie/2.1.0 bowtie/2.2.3* bwa/0.7.9a fastx/0.0.13 samtools/0.1.18* samtools/0.1.19
Phylogenetics	mrbayes/3.1.2 PhyML/3.1
RNA	ViennaRNA/2.1.6* mirdeep2/2.0.0.5* ranfold randfold/2/.0*
RNA-Seq	STAR/2.30e* cufflinks/0.8.3 cufflinks/2.0.0 cuffinks/2.0.2* cufflinks/2.1.1 misopy/0.5.2 rsem/1.2.4 tablemaker/2.1.1* tophat/1/.0/.14 tophat/2.0.9* tophat/2.0.10 tophat/2.0.13 trinity/7.17.14
Statistical Genetics /GWAS	ancestrymap/6210 fbat/2.0.3 haploview/4.1 impute/2.0.3 mach/1.0.16 merlin/1.1.2 pbat/3.61 pedcheck/1.1 plink/1.06 plinkseq/0.10 vcftools/0.1.12b

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