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Tufts Medical School Bioinformatic cluster installed software tools
under construction
A local software repository is available to meet the dynamic needs of individual Medical researchers. This effort is maintained by Lax Iyer(lax.iyer@tufts.edu), Joshua Ainsley(Joshua.Ainsley@tufts.edu), and Gavin Schnitzler(GSchnitzler@tuftsmedicalcenter.org). Please contact them to address specific software needs or requests.
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which adds the path /cluster/tufts/ngsp/ngsp/bin to a user's PATH.
Available software:
This list is always growing. To view what is actually there, do the following:
> ls /cluster/tufts/ngsp/ngsp/bin | more
Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end) Bowtie documentation
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