...
ImageMagick® is a software suite to create, edit, and compose bitmap images. It can read, convert and write images in a variety of formats (over 100) including DPX, EXR, GIF, JPEG, JPEG-2000, PDF, PhotoCD, PNG, Postscript, SVG, and TIFF. Use ImageMagick to translate, flip, mirror, rotate, scale, shear and transform images, adjust image colors, apply various special effects, or draw text, lines, polygons, ellipses and Bézier curves.
FFmpeg
FFmpeg is a complete, cross-platform solution to record, convert and stream audio and video. It includes libavcodec - the leading audio/video codec library.
ParaView is a multi-platform visualization application designed to visualize large data sets.
...
Beagle
BEAGLE is a state of the art software package for analysis of large-scale genetic data sets with hundreds of thousands of markers genotyped on thousands of samples. This software is not installed system-wide, as it does not require such. Instead download it by using the following: wget http://www.stat.auckland.ac.nz/~bbrowning/beagle/beagle.jar
IMa2
This program implements a method for generating posterior probabilities for complex demographic population genetic models for two or more populations.
R
In addition, many genetics R based software packages are installed. See above R listing.