| Classification | Module |
|---|
| Align/Mapping | blast/2.2.24
blat/20140708
bowtie/0.12.7*
bowtie/1.0.1
bowtie/2.1.0
bowtie2/2.2.3*
bwa/0.7.9a
exonerate/2.2.0 |
| Assembly | pandaseq/2.5
trinity/7.17.14
velvet/1.0.19
velvet/1.2.03
velvet/1.2.10 |
| BioVisual | cytoscape/2.8.3
IGV/1.5.30 |
| ChIP-Seq | MACS/1.4.2-1
MAnorm/2014-04-03 |
| General Purpose | R/2.10.1
R/2.15.0*
R/2.15.2
R/2.15.3
R/3.01
R/3.0.2
R/3.0.3
R/3.1.0
mathematica/8.0
mathematica/8.04
mathematica/9.0.0
mathematica/9.0.1
matlab/2011b
matlab/2012a
matlab/2012b
matlab/2013a*
matlab/2014a |
| Microbial ecology | QIIME/1.5.0*
QIIME/1.6.0
QIIME/1.7.0
QIIME/1.8.0
mothur/1.25.1
mothur/1.29.1 |