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BioPerl
Perl code which is useful in biology. Bioperl provides software modules for many of the typical tasks of bioinformatics programming. These include:
- Accessing sequence data from local and remote databases
- Transforming formats of database/ file records
- Manipulating individual sequences
- Searching for similar sequences
- Creating and manipulating sequence alignments
- Searching for genes and other structures on genomic DNA
- Developing machine readable sequence annotations