Page Comparison

/cluster/tufts/genomes
  /HomoSapiens
    /hg18
    /hg19
  /MusMusculus
    /mm9
    /mm10
  /RattusNorvegicus
    /rn4
    /rn5
  /CanisFamiliaris
    /canFam2
    /canFam3
  /BosTaurus
    /bosTau7
  /EquusCaballus
    /equCab2
  /GallusGallus
    /galGal4
  /SusScrofa
    /susScr3
  /DrosophilaMelanogaster
    /dm3
  /CaenorhabditisElegans
    /ce10 
  /DanioRerio
    /danRer7
  /SaccharomycesCerevisiae  (no Transcriptome)
    /sacCer2   
    /sacCer3 

  Within each build subdirectory, there are two subdirectories.

  /Annotation
  /Sequence

  /AbundantSequences -- data files with over-represented sequences 
  /BlastDB  -- blast formatted genomic indexes: use genome.fa as reference name
  /Bowtie2Index  -- Bowtie2 formatted indexes: use genome as reference name
  /BowtieIndex  -- Bowtie formatted indexes: use genome as reference name
  /BWAIndex  -- BWA formatted indexes: use genome.fa as reference name
  /Chromosomes  -- individual chromosomes as fasta files
  /Transcriptome  -- Bowtie2 formatted index of transcriptome sites: use transcript as ref name
  /WholeGenomeFasta -- Genome as one file with accessory files